There are so many ways to mark fabric. Pencils, Pens, Chalk, Tracing Paper, Soap Stone, Thread, etc. I was taught to make taylor tacks using thread.
Second to taylor tacks and depending on the type of fabric and application, I will sometimes use a piece of soap stone or chalk. I've never been a big fan of using pencils, pens, or tracing paper.
In the below picture, I have made my taylor tack through four sections of fabric. They are extra long to ensure all pieces of my fabric are still marked after pulling apart and clipping.